SubtiBank SubtiBank
lplD [2017-8-11 16:0:3]
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lplD [2017-8-11 16:0:3]

?-galacturonidase
locus
BSU07130
pI
5.36
mw
49.32 kDa
protein length
446 aa Sequence Blast
gene length
1338 bp Sequence Blast
function
utilization of pectin
product
α-galacturonidase
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]

    • Gene

    Coordinates
    782,958 → 784,298

    The protein

    Catalyzed reaction/ biological activity

  • cleavage of α-1,4-di-galacturonate [Pubmed|23416295]

    • Protein family

  • glycosyl hydrolase 4 family [Pubmed|23416295]

    • [SW|Domains]

  • active site motif: CHEV [Pubmed|23416295]

    • [SW|Cofactors]

  • NAD, Mn(2+) [Pubmed|23416295]

    • Structure

  • [PDB|3FEF]

    • Expression and Regulation

    Operons

    genes
    [gene|18B09A645AC8E13A1AD3B73A0C828E5A0F5D42BB|lplD]-[gene|EBD0F966FD7B3662814D530064BD307561A5CB15|yetF]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [Pubmed|26577401], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]
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    References

  • 23416295